Ok,

CloneCD images cannot be patched.

If you want to patch a game you will need these.

CDRwin
PPf-O-Matic
and also Fireburner(your choice)

To patch the game you need to first create the cuesheet using CDRwin and then download the PPf patch from megagames.com.
Use PPf-O-Matic to apply the patch to the .Bin file and then burn back to CD using either CDRwin or Fireburner.

All the above programs can be downloaded from my site below and also I have tutorials for you to follow if you get stuck.

Hope this helped.