Ok, I'll attempt to do it again. Before I try again, here's a part of the transcript from the compression process that shows an error that was received. Everything else checked out as "Errorlevel=0"... Do you think that had something to do with Setup2.bin being missing?
Input file: $$arcdatafile$$.tmp
Output file: $$arcpackedfile$$.tmp
Using PACKJPG.DLL for JPG recompression.
CLS_Precomp v 0.2.2
--> Memory patching & system functions emulation by ProFrager <--
More about PackJPG here:
http://www.elektronik.htw-aalen.de/packjpg
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ERROR: general (de)compression error in precomp
Compressing 2,498,479,512 bytes with precomp -intense0 -c- -o$$arcpackedfile$$.tmp $$arcdatafile$$.tmp
Errorlevel=-1073741819