On Reading with Clone CD you would need to tick:

Read Subchannel Data (both boxes)
Abort on Read Error

On Burning:

Don't repair subchannel data (tick)
Always close last session (tick)
Write Mode: RAW-DAO

And try to keep burn speed to 4x (8x on trustworthy media, 1x on cheap crap).

Could any of the above be relevant? because that should work.