Look up on ####://www.megagames.com to see if you need a patch of any sort - if anything, it would be a protection fix. Your NEC burner is probably OK for CloneCD.

So, in principle, CloneCD is all you need with the media you've got and any working game from which to copy (other than those that detect modchips).

If you must patch the game, then CDRWin to copy CD to hard Disk; PPF-O-MATIC to patch; CDRWin to burn back.