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I'm not sure but I believe that it has nothing to do with OTP or PTP, since it's data written on disk. There's (probably) a flag written during Lead-in that informs the drive that the disc is PTP written or OTP written, so as to know how to make the transition between layers...
Anyway, in ISObuster I see that there are two file systems. 1 is UDF and 1 is ISO and there are identical files in both systems. Some only have a difference of few bytes. Maybe if we can extract the files and then author again the disc with Gear Pro (where you can set manually the offset of each file) or another utility that does the same thing.
These are my thoughts, of course, which might be totally wrong of course.
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