as I recall first use CDIrip to get bin+cue out, then use autodummy to dummy the image (does not work if 1st track is audio) and then use bin2boot on the dummied .bin-file to get the your fixed CDI-image out.

well when you dummy the file....there are usually more than one file in the dummy file. so you can't use bin2boot. i just got dir2dj and supposedly that will convert the dummy directory to discjuggler but had no luck. dir2dj is just no working. don't know what.